Thanks everyone for your answers. By now, I think what I have to do is:
Choose a markup language that covers my needs as a base. For instance, markdown, or some XML.
Pick a tool or a set of tools to do the conversion to other needed formats. I've come to this tool that seems to cover a lot of needs: pandoc.org
Survey all of my required output formats and start planning for a development phase to create the scripts that automate the generation of those outputs
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Thanks everyone for your answers. By now, I think what I have to do is: